Generic SSV FormatΒΆ
The Generic Space-Seperated Value(SSV) Format allows you to import and use arbitrary attributes.
An .ssv file must start with a line defining available attributes in the file. The next line must contain the total number of atoms. There can be an arbitrary number of spaces between values, but there should be no blank lines between each entry.
Example:
#type resnm name posx posy posz attr=foo
3
H HOH H1W 0.5 1.0 0.0 0.2
H HOH H2W 0.0 1.0 0.0 0.5
O HOH OW 0.0 1.0 1.0 1.0
Available definitions are as follows:
| Name | Description | Format |
|---|---|---|
| id | atom id | integer |
| type | atom type | char |
| name | atom name | string |
| resid | residue id | integer |
| resnm | residue name | string |
| posx | x coordinate | double |
| posy | y coordinate | double |
| posz | z coordinate | double |
| velx | x velocity | double |
| vely | y velocity | double |
| velz | z velocity | double |
| attr=[name] | attribute | double |
| ignore | none | any |
The attr entry imports the array as an attribute. Special attributes that are automatically assigned if used are as follows:
| Name | Description |
|---|---|
| rotx, roty, rotz | Orientation axes |
Attributes can be ignored with the ignore entry. Additionally, extra attributes behind defined ones will be ignored.
Example:
#name ignore posx posy posz
1
ATOM asdf 0.0 1.0 0.0 asdf asdf
In this case, asdf entries are ignored.